Perl常用模块使用例子

一些常用模块的简单描述 http://www.perldoc.com/perl5.6/pod/perlmodlib.html

在perl 中使用模块：
模块的下载地址：http://www.cpan.org/modules/01modules.index.html
安装模块：
1. perl Makefile.PL
2. make
3. make test
4. make install
也可以用如下命令安装模块(已知的适用的系统redhat 9.0，其他的我不知道，请大家试试看 :) 。
perl -MCPAN -e shell>

接着输入：install MODEL_NAME

查看模块的帮助：
perldoc MODEL_NAME
例如：
perldoc Net::FTP

已有模块：(以下的内容转自CU，谢谢CU的朋友)
说明：
以下例子代码的测试是在FreeBSD & Solaris下进行的，Perl版本为5.005_03。

(1) Net::FTP
(2) Net::Telnet
(3) LWP::Simple, get()
(4) Expect
(5) XML::Simple, XMLin()
(6) Data::Dumper, Dumper()
(7) IO::Socket
(8) Date::Manip, DateCalc(), UnixDate()
(9) Date::Manip, Date_Cmp()
(10) File::Find, find()
(11) ExtUtils::Installed, new(), modules(), version()
(12) DBI, connect(), prepare(), execute(), fetchrow_array()
(13) Getopt::Std
(14) Proc::ProcessTable
(15) Shell
(16) Time::HiRes, sleep(), time()
(17) HTML::LinkExtor, links(), parse_file()
(18) Net::Telnet, open(), print(), getline()
(19) Compress::Zlib, gzopen(), gzreadline(), gzclose()
(20) Net::POP3, login(), list(), get()
(21) Term::ANSIColor
(22) Date::Calc Calendar(), Today()
(23) Term::Cap, Tgetend(), Tgoto, Tputs()
(24) HTTPD::Log::Filter
(25) Net::LDAP
(26) Net::SMTP mail(), to(), data(), datasend(), auth()
(27) MIME::Base64, encode_base64(), decode_base64()
(28) Net::IMAP::Simple, login(), mailboxes(), select(), get()...
(29) Bio::DB::GenBank, Bio::SeqIO
(30) Spreadsheet::ParseExcel
(31) Text::CSV_XS, parse(), fields(), error_input()
(32) Benchmark

说明：
以下例子代码的测试是在RH Linux7.2下进行的，Perl版本为5.6.0。

(33) HTTP:: Daemon, accept(), get_request()...
(34) Array::Compare, compare(), full_compare()...
(35) Algorithm::Diff, diff()
(36) List::Util, max(), min(), sum(), maxstr(), minstr()...
(37) HTML::Parser
(38) Mail::Sender
(39) Time::HiRes, gettimeofday(), usleep()
(40) Image::Magick

以下模块在RedHat 9.0 ,perl version v5.8.0 built 通过。
(41) Data::SearchReplace
----------------------------------------------------------
(1)Net::FTP

#!/usr/bin/perl -w
# file: ftp_recent.pl
# Figure 6.1: Downloading a single file with Net::FTP
use Net::FTP;

use constant HOST => 'ftp.perl.org';
use constant DIR => '/pub/CPAN';
use constant FILE => 'RECENT';

my $ftp = Net::FTP->new(HOST) or die "Couldn't connect: $@\n";
$ftp->login('anonymous') or die $ftp->message;
$ftp->cwd(DIR) or die $ftp->message;
$ftp->get(FILE) or die $ftp->message;
$ftp->quit;

warn "File retrieved successfully.\n";

-----------------------------------------------------------
(2)Net::Telnet
#!/usr/bin/perl -w
# file:remoteps.pl

use strict;
use Net::Telnet;
use constant HOST => 'phage.cshl.org';
use constant USER => 'lstein';
use constant PASS => 'xyzzy';

my $telnet=Net::Telnet->new(HOST);
$telnet->login(USER,PASS);
my @lines=$telnet->cmd('ps -ef');
print @lines;

--------------------------------------------------------------
(3)LWP::Simple, get()
#!/usr/bin/perl -w
use strict;
use LWP::Simple qw(get);

my $url = shift || "http://www.chinaunix.net";
my $content = get($url);

print $content;

exit 0;
最简单方便的get网页的方法。

-------------------------------------------------------------
(4) Expect

PHP代码:

#!/usr/bin/perl
use strict;
use Expect;

my $timeout = 2;
my $delay = 1;
my $cmd = "ssh";
my @params = qw/202.108.xx.xx -lusername -p22/;
my $pass = "passwd";

my $exp = Expect->spawn($cmd, @params) or die "Can't spawn $cmd\n";
$exp->expect($timeout, -re=>'[Pp]assword:');
$exp->send_slow($delay, "$pass\r\n");

$exp->interact();
$exp->hard_close();

exit 0;

-----------------------------------------------------------------
5) XML::Simple, XMLin()

PHP代码:

#!/usr/bin/perl -w
use strict;
use XML::Simple;
my $text = <<xml;
< ?xml version="1.0"? >
<web-app>
<servlet>
<servlet-name>php</servlet-name>
<servlet-class>net.php.servlet</servlet-class>
</servlet>
<servlet-mapping>
<servlet-name>php</servlet-name>
<url-pattern>*.php</url-pattern>
</servlet-mapping>
</web-app>
xml
my $x = XMLin($text);
foreach my $tag(keys %$x)
{
my %h = %{$$x{$tag}};
foreach(keys %h)
{
print "$tag => ";
print "$_ => $h{$_}\n";
}
}
exit 0;

----------------------------------------------------------------
(6) Data::Dumper, Dumper()

PHP代码:

#!/usr/bin/perl -w
use strict;
use Data::Dumper;

print Dumper(@INC);
print Dumper(%ENV);
exit 0;

-------------------------------------
(7) IO::Socket

PHP代码:

#!/usr/bin/perl -w
use strict;
use IO::Socket;

my $host = "www.chinaunix.net";
my $port = "80";
my $http_head = "GET / HTTP/1.0\nHost: $host:$port\n\n";
my $sock = IO::Socket::INET->new("$host:$port")
or die "Socket() error, Reason : $! \n";

print $sock $http_head;
print <$sock>;

exit 0;

---------------------------------------------------------------
(8) Date::Manip, DateCalc(), UnixDate()

PHP代码:

#!/usr/bin/perl
use strict;
use Date::Manip;
my $date1 = "Fri Jun 6 18:31:42 GMT 2003";
my $date2 = "2003/05/06";
my $flag=&Date_Cmp($date1,$date2);

if($flag<0)
{
print "date1 is earlier!\n";
}
elsif($flag==0)
{
print "the two dates are identical!\n";
}
else
{
print "date2 is earlier!\n";
}
exit 0;

--------------------------------------------------------------------
10) File::Find, find()
PHP代码:

#!/usr/bin/perl -w
use strict;
use File::Find;

my $file = "access.log";
my $path = "/";

find(&process, $path);

sub process{ print $File::Find::dir, "$_\n" if(/$file/); }

exit 0;

#用于在unix文件树结构中查找对象。

---------------------------------------------------------------
(11) ExtUtils::Installed, new(), modules(), version()

查看已经安装的模块的相应信息。
PHP代码:

#!/usr/bin/perl
use strict;
use ExtUtils::Installed;

my $inst= ExtUtils::Installed->new();
my @modules = $inst->modules();

foreach(@modules)
{
my $ver = $inst->version($_) || "???";
printf("%-12s -- %s\n", $_, $ver);
}
exit 0;

--------------------------------------------------------------------
(12) DBI, connect(), prepare(), execute(), fetchrow_array()

PHP代码:

#!/usr/bin/perl
use strict;
use DBI;

my $dbh = DBI->connect("dbi:mysql:dbname", 'user','passwd', '')
or die "can't connect!\n";
my $sql = qq/show variables/;
my $sth = $dbh->prepare($sql);
$sth->execute();

while(my @array=$sth->fetchrow_array())
{
printf("%-35s", $_) foreach(@array);
print "\n";
}
$dbh -> disconnect();
exit 0;

------------------------------------------------------------------------
(13) Getopt::Std

命令行参数解析。

PHP代码:

#!/usr/bin/perl
use strict;
use Getopt::Std;

my %opts;
getopts("c:hv", %opts);

foreach(keys %opts)
{
/c/ && print "welcome to ", $opts{$_} || "ChinaUnix", "!\n";
/h/ && print "Usage : $0 -[hv] -[c msg] \n";
/v/ && print "This is demo, version 0.001.001 built for $^O\n";
}
exit 0;

------------------------------------------------------------------------
(14) Proc::ProcessTable

#直接访问Unix进程表，类似ps command。

PHP代码:

#!/usr/bin/perl
use strict;
use Proc::ProcessTable;

my $pt = new Proc::ProcessTable;

foreach(reverse sort @{$pt->table})
{
print $_->pid, " => ";
print $_->cmndline, "\n";
}
exit 0;

--------------------------------------------------------------------
(15) Shell

PHP代码:

#!/usr/bin/perl
use strict;
use Shell;

print "now is : ", date();
print "current time is : ", date("+%T");

my @dirs = ls("-laF");
foreach(@dirs)
{
print if(//$/);#print directory
}
exit 0;

Shell命令直接做为函数，在Perl中调用。

---------------------------------------------------------------------
Another use of Time::HiRes Module.

(16) Time::HiRes, sleep(), time()

PHP代码:

#!/usr/bin/perl
use strict;
use Time::HiRes qw(sleep time);

$| = 1;
my $before = time;
for my $i (1..100)
{
print "$i\n";
sleep(0.01);
}
printf("time used : %.5f seconds\n", time - $before);
exit 0;

use Time::HiRes后，此模块提供sleep(), alarm(), time()的增强版以
取代perl内置的相应函数。
其中sleep()和alarm()的参数可以是小数。比如sleep(0.1)表示休眠0.1秒，
time()可以返回浮点数。

----------------------------------------------------------------------
(17) HTML::LinkExtor, links(), parse_file()

PHP代码:

#!/usr/bin/perl
use strict;
use HTML::LinkExtor;

my $p = new HTML::LinkExtor;
$p->parse_file(*DATA);

foreach my $links ($p->links())
{
map {print "$_ "} @{$links};
print "\n";
}
exit 0;

__DATA__

代码:
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1 Strict//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en-US">
<head>
<meta http-equiv="Content-Type" content="text/html"/>
<title>CPAN</title>
<!-- Copyright Jarkko Hietaniemi <[e-mail]> 1998-2002
All Rights Reserved.
The CPAN Logo provided by J.C. Thorpe.
You may distribute this document either under the Artistic License
(comes with Perl) or the GNU Public License, whichever suits you.

You are not allowed to remove or alter these comments. -->
<!-- $Id: cpan-index.html,v 1.7 2003/02/17 10:23:46 jhi Exp $ -->
<link rev="made" href="mailto:[e-mail]"></link>
<style type="text/css">
<!--

body{
color:black;
background:white;
margin-left:2%;
margin-right:2%;
}

h1{
text-align:center;
}

img {
vertical-align: 50%;
border: 0;
}

.left{
text-align:left;
float:none;
}

.center{
text-align:center;
float:none;
}

.right{
text-align:right;
float:none;
}

-->
</style>
</head>
<body>

<table width="100%">
<tr>
<td rowspan="2">
<div class="left">
<img src="misc/jpg/cpan.jpg"
alt="[CPAN Logo]" height="121" width="250"/>
</div>
</td>
<td>
<div class="right">
<h1><a id="top">Comprehensive Perl Archive Network</a></h1>
</div>
</td>
</tr>
<tr>
<td>
<div class="center">
2003-06-10 online since 1995-10-26<br/>1662 MB 246 mirrors<br/>2903 authors 4767 modules
</div>
</td>
</tr>
<tr>
<td colspan="2">
<p class="left">
Welcome to CPAN! Here you will find All Things Perl.
</p>
</td>
<td>
</td>
</tr>
</table>

<hr/>

<table width="100%">

<tr>

<td>

<h1>Browsing</h1>
<ul>
<li><a href="modules/index.html">Perl modules</a></li>
<li><a href="scripts/index.html">Perl scripts</a></li>
<li><a href="ports/index.html">Perl binary distributions ("ports")</a></li>
<li><a href="src/README.html">Perl source code</a></li>
<li><a href="RECENT.html">Perl recent arrivals</a></li>
<li><a href="http://search.cpan.org/recent">recent</a> Perl modules</li>
<li><a href="SITES.html">CPAN _fcksavedurl=""SITES.html">CPAN" sites</a> list</li>
<li><a href="http://mirrors.cpan.org/">CPAN sites</a> map</li>
</ul>

</td>

<td>

<h1>Searching</h1>

<ul>
<li><a href="http://kobesearch.cpan.org/">Perl core and CPAN modules documentation </a> (Randy Kobes)</li>
<li><a href="http://www.perldoc.com/">Perl core documentation</a> (Carlos Ramirez)</li>
<li><a href="http://search.cpan.org/">CPAN modules, distributions, and authors</a> (search.cpan.org)</li>
<li><a href="http://wait.cpan.org/">CPAN modules documentation</a> (Ulrich Pfeifer)</li>
</ul>

<h1>FAQ etc</h1>

<ul>
<li><a href="misc/cpan-faq.html">CPAN Frequently Asked Questions</a></li>
<li><a href="http://lists.cpan.org/">Perl Mailing Lists</a></li>
<li><a href="http://bookmarks.cpan.org/">Perl Bookmarks</a></li>
</ul>

<p><small>
Yours Eclectically, The Self-Appointed Master Librarian (OOK!) of the CPAN<br/>
<i>Jarkko Hietaniemi</i>
<a href="mailto:[e-mail]">[e-mail]</a>
<a href="disclaimer.html">[Disclaimer]</a> _fcksavedurl=""disclaimer.html">[Disclaimer]</a>"
</small>
</p>

</td>

</tr>

</table>

<hr/>

<table width="100%">
<tr>

<td>
<div class="left">
<a href="http://validator.w3.org/check?uri=http%3A%2F%2Fwww.cpan.org%2Findex.html">
<img src="misc/gif/valid-xhtml10.gif" alt="Valid XHTML 1.0!" height="31" width="88"/></a>
<a href="http://jigsaw.w3.org/css-validator/validator?uri=http%3A%2F%2Fwww.cpan.org%2Findex.html">
<img src="misc/gif/vcss.gif" alt="[Valid CSS]" height="31" width="88"/></a>
</div>
</td>
<td>
<div class="right">

<table width="100%">

<tr>
<td class="right">
<small>
CPAN master site hosted by
</small>
</td>
</tr>
<tr>
<td class="right">
<a href="http://www.csc.fi/suomi/funet/verkko.html.en/"><img src="misc/gif/funet.gif" alt="FUNET" height="25" width="88"/></a>
</td>
</tr>
</table>

</div>
</td>

</tr>
</table>

</body>
</html>

--------------------------------------------------------------------------------
18) Net::Telnet, open(), print(), getline()

PHP代码:

#!/usr/bin/perl
use strict;
use Net::Telnet;

my $p = Net::Telnet->new();
my $h = shift || "www.chinaunix.net";

$p->open(Host => $h, Port => 80);
$p->print("GET /\n");
while(my $line = $p->getline())
{
print $line;
}
exit 0;

--------------------------------------------------------------------------------
(19) Compress::Zlib, gzopen(), gzreadline(), gzclose()

PHP代码:

#!/usr/bin/perl
use strict;
use Compress::Zlib;

my $gz = gzopen("a.gz", "rb");

while( $gz->gzreadline(my $line) > 0 )
{
chomp $line;
print "$line\n";
}

$gz->gzclose();
exit 0;

#直接使用shell的zmore, zless, zcat打开文件也不错，但是如果gz文件很大，还是应该选择zlib。

--------------------------------------------------------------------------------
(20) Net::POP3, login(), list(), get()

PHP代码:

#!/usr/bin/perl
use strict;
use Net::POP3;
use Data::Dumper;

my $user = "user";
my $pass = shift or die "Usage : $0 passwd\n";
my $host = "pop3.web.com";#pop3 address

my $p = Net::POP3->new($host) or die "Can't connect $host!\n";
$p->login($user, $pass) or die "user or passwd error!\n";
my $title = $p->list or die "No mail for $user\n";

foreach my $h(keys %$title)
{
my $msg = $p->get($h);
print @$msg;
}
$p->quit;
exit 0;

telnet pop3.web.com 110 也可以直接连到pop3 server上，然后通过pop3命令与邮件服务器交互，

简单的命令有：
USER name
PASS string
STAT
LIST [n]
RETR msg
DELE msg
NOOP
RSET
QUIT
有兴趣的朋友可以试一试。
这样，也就可以利用Net::Telnet来做一个收信件的简单程序。

--------------------------------------------------------------------------------
(21) Term::ANSIColor 例子一

PHP代码:

#!/usr/bin/perl
use strict;
use Term::ANSIColor qw(:constants);

$Term::ANSIColor::AUTORESET = 1;

$| = 1;
my $str = "Welcome to chinaunix ^_^!\n";

for my $i(0..length($str)-1)
{
print BOLD RED substr($str, $i, 1);
select(undef, undef, undef, 0.3);
}
exit 0;

查看ANSIColor.pm可以得知作者是利用ANSI转义序列，改变终端字符颜色的。
print "\e[34m\n";
即是改变前景色为blue;

shell命令为echo -e "\033[31m";#改变前景色为红色。
(freeBSD，Solaris下此命令测试OK)

--------------------------------------------------------------------------------
(21) Term::ANSIColor 例子二

PHP代码:

#!/usr/bin/perl
use strict;
use Term::ANSIColor qw(:constants);

$Term::ANSIColor::AUTORESET = 1;

$| = 1;

print "\e[20;40H";
my $str = "Welcome to chinaunix ^_^!\n";

print BOLD BLINK $str;
exit 0;

转义序列echo -e "\033[20;40H";可以改变光标位置。
perl中就可以：print "\e[20;40H";

--------------------------------------------------------------------------------
(22) Date::Calc Calendar(), Today()

PHP代码:

#!/usr/bin/perl
use strict;
use Date::Calc qw(Calendar Today);

my $year = "2003";
my $month = "6";
my $day;

my $cal = Calendar($year, $month);
(undef, undef, $day) = Today();

$cal =~ s/$day/e[5me[31m$daye[0m/;

print $cal;
exit 0;

本例子打印出一个2003年6月份的日历，当天日期用红色的闪烁数字表示。

Date::Calc提供了时间日期计算的另一种方式（一种是Date::Manip），
大量简单方便的方法（函数）供使用者调用。

在例子中的年和月我是自己指定的，也可以
($year, $month, $day) = Today();

颜色和闪烁是用ANSI escape sequences。
详细说明尽在ANSIColor.pm source和perldoc Term::ANSIColor里。
（perldoc Term::ANSIColor其实也在ANSIColor.pm source里） ：）

--------------------------------------------------------------------------------
(23) Term::Cap, Tgetend(), Tgoto, Tputs()

PHP代码:

#!/usr/bin/perl
use strict;
use Term::Cap;

$| = 1;
my $i = 1;
my $flag = 0;

my $tcap = Term::Cap->Tgetent({TERM => undef, OSPEED => 1});
$tcap->Tputs('cl', 1, *STDOUT);#clear screen

while($i)
{
if($i > 50 || $flag == 1)
{
$i --;
$flag = 1;
$flag = 0 if($i == 1);
}
else
{
$i ++;
$flag = 0;
}

$tcap->Tgoto('cm', $i, 15, *STDOUT);#move cursor
print " welcome to chinaunix! ";
select(undef, undef, undef, 0.02);
}
exit 0;

Term::Cap 终端控制模块。
代码效果：一个左右移动的字串 "welcome to chinaunix! " ：）

--------------------------------------------------------------------------------
(24) HTTPD::Log::Filter

PHP代码:

#!/usr/bin/perl
use strict;
use HTTPD::Log::Filter;

my $filter = HTTPD::Log::Filter->new(format => "CLF",
capture => ['request', 'host']);

foreach(`cat access_log`)
{
chomp;
unless( $filter->filter($_) )
{
print "[$_]\n";
next;
}
print $filter->request, "\n";
}
exit 0;

如果我们工作中经常需要分析Apache日志，这个模块可以提供一些方便。
创建对象实例以后，用filter方法来过滤，没有正确匹配的行将返回false,
然后用相应的方法print出我们需要的数据。(host,request,date...等等方法，
由capture选项以参数引入)
可以用re方法打印出作者所使用的匹配模式：

代码:

use HTTPD::Log::Filter;
print HTTPD::Log::Filter->new(format=>"CLF",capture=>['request'])->re;

详见perldoc HTTPD::Log::Filter. enjoy it

--------------------------------------------------------------------------------
(25) Net::LDAP

PHP代码:

#!/usr/bin/perl
use Net::LDAP;

## get a object of ldap
$ldap = Net::LDAP->new("1.1.1.1", port =>"389", version => 3) or die "$@";
# object of Net::LDAP::Message
$mesg = $ldap->bind($_cer_id, password => $_cer_pw); # 查詢用的ID/PASSWD
if($mesg->is_error) {die $mesg->error;}
$mesg = $ldap->search(
base => "o=abc,c=tt", # 起始點
scope => "sub", # 範圍
filter => "(uid=apile)", # 條件
attrs => ["cn"], # 要取得的attribute
typesonly => 0 );

my $max_len = $mesg->count; ## get number of entry

#--取得中文姓名，可能不只一筆
for($i=0;$i<$max_len;$i++){
$entry = $mesg->entry($i);
$cname = $entry->get_value("cn"); # get chinese name
}

#--作密碼認證
$mesg = $ldap->bind($entry->dn, password => "abc", version => 3)
||die "can't connect to ldap";
if($mesg->code) { print "verification is failed"}
else{ print "success"}

LDAP version 3..可以用於查詢基本資料、驗證密碼之用..

--------------------------------------------------------------------------------
(26) Net::SMTP mail(), to(), data(), datasend(), auth()

PHP代码:

#!/usr/bin/perl

use strict;
use Net::SMTP;

my $smtp = Net::SMTP->new('smtp.sohu.com', Timeout => 10, Debug => 0)
or die "new error\n";
#$smtp->auth("user", "passwd") or die "auth error\n";
$smtp->mail('some');
$smtp->to('[e-mail]');
$smtp->data("chinaunix,哈楼你好啊!\n[b]:[/b])");
$smtp->quit;

exit 0;

有的SMPT Server需要Authentication，那么就使用auth()方法进行验证。
Debug模式打开，可以看到详细的SMTP命令代码。也有助于我们排错。

--------------------------------------------------------------------------------
(27) MIME::Base64, encode_base64(), decode_base64()

PHP代码:

#!/usr/bin/perl -w

use strict;
use MIME::Base64;

foreach(<DATA>)
{
print decode_base64($_);
}
exit 0;

__DATA__
xOO6w6Osu7bTrcC0tb1jaGluYXVuaXguY29tIFtwZXJsXbDmIQo=
1eLKx2Jhc2U2NLHgwuu1xMD919OjrNPJTUlNRTo6QmFzZTY0xKO/6cC0veLC66GjCg==
cGVybGRvYyBNSU1FOjpCYXNlNjQgZm9yIGRldGFpbHMsIGVuam95IGl0IDopCg==

用来处理MIME/BASE64编码。

--------------------------------------------------------------------------------
(28) Net::IMAP::Simple, login(), mailboxes(), select(), get()...

PHP代码:

#!/usr/bin/perl

use strict;
use Net::IMAP::Simple;

my $server = new Net::IMAP::Simple( 'imap.0451.com' );
$server->login( 'user_name', 'passwd');

#show the mailboxs
#map {print "$_\n";} $server->mailboxes();

#show mail's content
my $n = $server->select( 'inbox' ) or die "no this folder\n";
foreach my $msg ( 1..$n )
{
my $lines = $server->get( $msg );
print @$lines;
print "_________________ Press enter key to view another! ...... __________________\n";
read STDIN, my $key, 1;
}

exit 0;

在取得中文的Folder时，会出现乱码的情况，
这个问题现在没有解决。英文的Folder则没问题。

IMAP协议，默认端口为143，可以用telnet登录。

telnet imap.xxx.com 143
2 login user pass
2 list "" *
2 select inbox
......

-------------------------------------------------------------------------
(29) Bio::DB::GenBank, Bio::SeqIO

bioperl(http://bioperl.org/)模块使用--生物信息学中用的模块
功能：根据核酸的gi号自动从GenBank中提取FASTA格式的序列，可以多序列提取。
PHP代码:
#!/usr/bin/perl -w

use Bio::DB::GenBank;
use Bio::SeqIO;
my $gb = new Bio::DB::GenBank;

my $seqout = new Bio::SeqIO(-fh => *STDOUT, -format => 'fasta');

# if you want to get a bunch of sequences use the batch method
my $seqio = $gb->get_Stream_by_id([ qw(27501445 2981014)]);

while( defined ($seq = $seqio->next_seq )) {
$seqout->write_seq($seq);
}

-------------------------------------------------------------------------
(30) Spreadsheet::ParseExcel
perl解析Excel文件的例子。

PHP代码:

#!/usr/bin/perl -w

use strict;
use Spreadsheet::ParseExcel;
use Spreadsheet::ParseExcel::FmtUnicode; #gb support

my $oExcel = new Spreadsheet::ParseExcel;

die "You must provide a filename to $0 to be parsed as an Excel file" unless @ARGV;
my $code = $ARGV[1] || "CP936"; #gb support
my $oFmtJ = Spreadsheet::ParseExcel::FmtUnicode->new(Unicode_Map => $code); #gb support
my $oBook = $oExcel->Parse($ARGV[0], $oFmtJ);
my($iR, $iC, $oWkS, $oWkC);
print "FILE :", $oBook->{File} , "\n";
print "COUNT :", $oBook->{SheetCount} , "\n";

print "AUTHOR:", $oBook->{Author} , "\n"
if defined $oBook->{Author};

for(my $iSheet=0; $iSheet < $oBook->{SheetCount} ; $iSheet++)
{
$oWkS = $oBook->{Worksheet}[$iSheet];
print "--------- SHEET:", $oWkS->{Name}, "\n";
for(my $iR = $oWkS->{MinRow} ;
defined $oWkS->{MaxRow} && $iR <= $oWkS->{MaxRow} ;
$iR++)
{
for(my $iC = $oWkS->{MinCol} ;
defined $oWkS->{MaxCol} && $iC <= $oWkS->{MaxCol} ;
$iC++)
{
$oWkC = $oWkS->{Cells}[$iR][$iC];
print "( $iR , $iC ) =>", $oWkC->Value, "\n" if($oWkC);
}
}
}

--------------------------------------------------------------------------------
(31) Text::CSV_XS, parse(), fields(), error_input()

如果field里面也包含分隔符(比如"tom,jack,jeff","rose mike",O'neil,"kurt,korn")，那么我们
解析起来确实有点麻烦，
Text::CSV_XS挺方便。
PHP代码:
#!/usr/bin/perl

use strict;
use Text::CSV_XS;

my @columns;
my $csv = Text::CSV_XS->new({
'binary' => 1,
'quote_char' => '"',
'sep_char' => ','
});

foreach my $line(<DATA>)
{
chomp $line;
if($csv->parse($line))
{
@columns = $csv->fields();
}
else
{
print "[error line : ", $csv->error_input, "]\n";
}

map {printf("%-14s\t", $_)} @columns;
print "\n";
}
exit 0;

__DATA__
id,compact_sn,name,type,count,price
37,"ITO-2003-011","台式机,compaq","128M","290","1,2900"
35,I-BJ-2003-010,"显示器,硬盘,内存",'三星',480,"1,4800"
55,"C2003-104",笔记本,"Dell,Latitude,X200",13900,"1,13900"

--------------------------------------------------------------------------------
(32) Benchmark

PHP代码:

#!/usr/bin/perl

use Benchmark;

timethese(100,
{
'local'=>q
{
for(1..10000)
{
local $a=$_;
$a *= 2;
}
},

'my'=>q
{
for(1..10000)
{
my $a=$_;
$a *= 2;
}
}
});

可以拿?硭隳硞€algorithm耗費多少時間..
timethese(做幾次iteration,{
'Algorithm名稱'=>q{ 要計算時間的algorithm },
'Algorithm名稱'=>q{ 要計算時間的algorithm }
});

--------------------------------------------------------------------------------
(33) HTTP::Daemon, accept(), get_request(), send_file_response()

一个简单的，只能处理单一请求的Web服务器模型。
send_file_response()方法能把Client请求的文件传送过去。
PHP代码:
#!/usr/bin/perl

use HTTP:: Daemon;

$| = 1;
my $wwwroot = "/home/doc/";
my $d = HTTP:: Daemon->new || die;
print "Perl Web-Server is running at: ", $d->url, " ...\n";

while (my $c = $d->accept)
{
print $c "Welcome to Perl Web-Server<br>";

if(my $r = $c->get_request)
{
print "Received : ", $r->url->path, "\n";
$c->send_file_response($wwwroot.$r->url->path);
}

$c->close;
}

--------------------------------------------------------------------------------
(34) Array::Compare, compare(), full_compare()

用于数组比较。
本例实现类似shell command - diff的功能。
如果我们要比较的不是文件，而是比如系统信息，远程文件列表，数据库内容变化等，这个模块会给我们提供方便灵活的操作。
PHP代码:
#!/usr/bin/perl

use Array::Compare;

$comp = Array::Compare->new(WhiteSpace => 1);
$cmd = "top -n1 | head -4";
@a1 = `$cmd`;
@a2 = `$cmd`;

@result = $comp->full_compare(@a1, @a2);

foreach(@result)
{
print $_ + 1, "th line:\n";
print "> $a1[$_]> $a2[$_]";
print "-----\n";
}
exit 0;

--------------------------------------------------------------------------------
(35) Algorithm::Diff, diff()

用于文件比较。
实现类似unix command diff的功能。
PHP代码:
#!/usr/bin/perl

use Algorithm::Diff qw(diff);

die("Usage: $0 file1 file2\n") if @ARGV != 2;

my ($file1, $file2) = @ARGV;
-T $file1 or die("$file1: binary\n");
-T $file2 or die("$file2: binary\n");

@f1 = `cat $file1 `;
@f2 = `cat $file2 `;

$diffs = diff(@f1, @f2);

foreach $chunk (@$diffs)
{
foreach $line (@$chunk)
{
my ($sign, $lineno, $text) = @$line;
printf "$sign%d %s", $lineno+1, $text;
}

print "--------\n";
}

--------------------------------------------------------------------------------
(36) List::Util, max(), min(), sum(), maxstr(), minstr()...

列表实用工具集。
PHP代码:
#!/usr/bin/perl

use List::Util qw/max min sum maxstr minstr shuffle/;

@s = ('hello', 'ok', 'china', 'unix');

print max 1..10; #10
print min 1..10; #1
print sum 1..10; #55
print maxstr @s; #unix
print minstr @s; #china
print shuffle 1..10; #radom order

--------------------------------------------------------------------------------
(37) HTML::Parser

解析HTML。本例为找出一个html文本中的所有图片的地址。（即IMG标签中的src）

子程序start中的"$tag =~ /^img$/"为过滤出img标签。
如果换为"$tag =~ /^a$/"，即是找出所有的链接地址。

详细的方法介绍，请见`perldoc HTML::Parser`

PHP代码:
#!/usr/bin/perl

use LWP::Simple;
use HTML::Parser;

my $url = shift || "http://www.chinaunix.net";
my $content = LWP::Simple::get($url) or die("unknown url\n");

my $parser = HTML::Parser->new(
start_h => [&start, "tagname, attr"],
);

$parser->parse($content);
exit 0;

sub start
{
my ($tag, $attr, $dtext, $origtext) = @_;
if($tag =~ /^img$/)
{
if (defined $attr->{'src'} )
{
print "$attr->{'src'}\n";
}
}
}

--------------------------------------------------------------------------------
(38) Mail::Sender

1)发送附件

PHP代码:

#!/usr/bin/perl

use Mail::Sender;

$sender = new Mail::Sender{
smtp => 'localhost',
from => 'xxx@localhost'
};
$sender->MailFile({
to => '[e-mail]',
subject => 'hello',
file => 'Attach.txt'
});
$sender->Close();

print $Mail::Sender::Error eq "" ? "send ok!\n" : $Mail::Sender::Error;

2)发送html内容

PHP代码:

#!/usr/bin/perl

use Mail::Sender;

open(IN, "< ./index.html") or die("");

$sender = new Mail::Sender{
smtp => 'localhost',
from => 'xxx@localhost'
};

$sender->Open({
to => '[e-mail]',
subject => 'xxx',
msg => "hello!",
ctype => "text/html",
encoding => "7bit",
});

while(<IN>)
{
$sender->SendEx($_);
}
close IN;
$sender->Close();

print $Mail::Sender::Error eq "" ? "send ok!\n" : $Mail::Sender::Error;

发送带有图片或其他信息的html邮件，请看`perldoc Mail::Sender`
中的"Sending HTML messages with inline images"及相关部分。

--------------------------------------------------------------------------------
(40) Image::Magick

http://www.imagemagick.org/www/perl.html

代码:

#!/usr/local/bin/perl
use Image::Magick;

my($image, $x);

$image = Image::Magick->new;
$x = $image->Read('girl.png', 'logo.png', 'rose.png');
warn "$x" if "$x";

$x = $image->Crop(geometry=>'100x100"+100"+100');
warn "$x" if "$x";

$x = $image->Write('x.png');
warn "$x" if "$x";

The script reads three images, crops them, and writes a single image as a GIF animation
sequence. In many cases you may want to access individual images of a sequence. The next
example illustrates how this is done:

代码:
#!/usr/local/bin/perl
use Image::Magick;

my($image, $p, $q);

$image = new Image::Magick;
$image->Read('x1.png');
$image->Read('j*.jpg');
$image->Read('k.miff[1, 5, 3]');
$image->Contrast();
for ($x = 0; $image->[x]; $x++)
{
$image->[x]->Frame('100x200') if $image->[x]->Get('magick') eq 'GIF';
undef $image->[x] if $image->[x]->Get('columns') < 100;
}
$p = $image->[1];
$p->Draw(stroke=>'red', primitive=>'rectangle', points=>20,20 100,100');
$q = $p->Montage();
undef $image;
$q->Write('x.miff');

Suppose you want to start out with a 100 by 100 pixel white canvas with a red pixel in the
center. Try

$image = Image::Magick->new;
$image->Set(size=>'100x100');
$image->ReadImage('xc:white');
$image->Set('pixel[49,49]'=>'red');

Or suppose you want to convert your color image to grayscale:

$image->Quantize(colorspace=>'gray');

Here we annotate an image with a Taipai TrueType font:

$text = 'Works like magick!';
$image->Annotate(font=>'kai.ttf', pointsize=>40, fill=>'green', text=>$text);

Other clever things you can do with a PerlMagick objects include

$i = $#$p"+1"; # return the number of images associated with object p
push(@$q, @$p); # push the images from object p onto object q
@$p = (); # delete the images but not the object p
$p->Convolve([1, 2, 1, 2, 4, 2, 1, 2, 1]); # 3x3 Gaussian kernel

-------------------------------------------------------------------------------------------
(41)Data::SearchReplace

代码:
use Data::SearchReplace ('sr');
sr({ SEARCH => 'searching', REPLACE => 'replacing'}, \$complex_var);

# or OO

use Data::SearchReplace;
$sr = Data::SearchReplace->new({ SEARCH => 'search for this',
REPLACE => 'replace with this' });

$sr->sr(\$complex_var);
$sr->sr(\$new_complex_var);

# if you want more control over your search/replace pattern you
# can pass an entire regex instead complete with attributes

sr({ REGEX => 's/nice/great/gi' }, \$complex_var);

# you can even use a subroutine if you'd like
# the input variable is the value and the return sets the new
# value.

sr({ CODE => sub { uc($_[0]) } }, \$complex_var);

代码:
use Data::SearchReplace qw(sr);
sr({SEARCH => 'find', REPLACE => 'replace'}, \@data);
sr({REGEX => 's/find/replace/g'}, \%data);